February 7, 2014

The Awards of Asilomar #ASN2014


Don Abbott Postdoc Research Award:

Winner: 

Carl Boettiger, University of California, Santa Cruz
"Ecological management for an uncertain world: robust decision theory in face of regime shifts"

Runner-ups

Alex Jordan, University of Texas, Austin
"Reproductive foraging theory: spider males choose mates by selecting among competitive environments"

Benjamin Callahan, Stanford University
"Niche construction evolves quickly and repeatably in experimental microbial populations"


Ed Ricketts Student Talk Award

Winner

Marjorie Weber, Cornell University
"Merging phylogenetic and experimental methods to test hypotheses about the evolution of mutualistic defensive traits in plants"

Runner-ups

Jason Shapiro, Yale University
"The role of pleiotropy in horizontally transmitted mutualistic symbioses"

Rachael Bay, Stanford University
"Genomic differences reflect fitness over a small-scale thermal gradient"

Ruth Patrick Student Poster Award

Winner

David Harris, University of California, Davis
"Generating realistic species assemblies with a partially observed Markov random field"

Tweets of Asilomar #ASN2014

There was a hum of talk in person and on Twitter during the meetings, so I decided to capture a few for posterity--and to inspire the next one!

Rachael Bay (@RachaelABay)
Excited to be at the first ASN meeting in 12 years! #ASN2014

Holly Kindsvater (@HollyKindsvater)
Wow live tweeting a meeting is harder than I expected! Many interesting convos going on in life & online! #ASN2014

Ben Sheldon (@Ben_Sheldon_EGI)
Wi-fi problems during symp, but highlights tour-de-force presentations by de Meester and Nosil on microgeographic adaptation #ASN2014

Caitlin MacKenzie (@CaitlinInMaine)
#ASN2014 has pushed me out of my comfort zone -- both in model complexity & west-coast study systems. But, I love it!

Alex Perkins (@TAlexPerkins)
@cboettig thanks for #asn2014 debate coverage. sounds like a real brawl. we need these at every meeting!
  
Jenna Morgan Lang (@jennomics)
Some talks are SO hard to live tweet because the speaker is rapid-firing too much cool stuff. I'm looking at you, @TadashiFukami #ASN2014

Caitlin MacKenzie (@CaitlinInMaine)
Overheard at #ASN2014 "I'm definitely being stretched here, but stretched in a good way. Mental yoga."

Marc Mangel (@MarcMangel1)
Am Nat is my favorite journal and this ASN meeting is superb!
Do it again, Council
#ASN2014
@ASNAmNat

Luke Harmon (@lukejharmon)
Had a great time at #ASN2014. Thanks for all the zombie love. Shout out to Dan Bolnick for an amazing mtg and Trevor Price for the debate.


Marc Johnson (@evoecolab)
@ASNAmNat Regretting not going to #ASN2014. Sounded amazing! My type of meeting ...


Holly Kindsvater (@HollyKindsvater)
Andrew Beckerman: daphnia have locally adapted developmental plasticity. Sweet combo of common garden & genomics, much to chew on. #ASN2014


Jenna Morgan Lang (@jennomics)
.@boechera just gave THE most awesomest talk. I'm totally jonesing to read soil microbe/plant phenology paper now! #ASN2014

Holly Kindsvater (@HollyKindsvater)
Spent a satisfying afternoon working on #science with @dr_k_lo #ASN2014

Andrew Beckerman (@beckerhopper)
So long #ASN2014 and thanks for all the sunny science. Well done team @DanielBolnick

Holly Kindsvater (@HollyKindsvater)
Sorry to be leaving Asilomar today. Thanks for a great meeting @ASNAmNat ! #asn2014



Daniel Bolnick (@DanielBolnick)
If you didn't get a chance to buy one of Alex Wild's photo in the raffle / silent auction, visit alexanderwild.com & mention #ASN2014



December 6, 2013

Peer Review Step by Step at Am Nat

So, in reading along in the Twitter stream, I noticed this conversation by @hylopsar (Hi, Rafael!) about how opaque the steps in the peer review process are for authors who haven't been on the editorial side and how nice it would be to see what the expectations are for "normal":




This is just my view from the Am Nat journal office of course!

1) The manuscript arrives in the web system. One of us in the journal office gives it what the system calls a technical check--Is the PDF readable? Did the math symbols turn into tiny empty boxes? Is it double spaced? We try to minimize annoyance, but reviewers hate it if isn't formatted right, so we're just trying to save you grief later.

2) The manuscript then waits for one of the three deciding editors to claim it. This depends on people's schedules, but it generally moves along every day. The deciding editor finds the time to look the manuscript over and determine whether it can fit our niche. If it seems like it can or they aren't sure, it goes to the next stage...

3) The manuscript gets assigned to an associate editor. We get manuscripts across a broad spectrum of subjects. Though we have quite a few associate editors, we sometimes struggle to get a manuscript assigned. AEs have busy schedules and not all have the expertise needed for that manuscript. We also avoid loading up an AE all at once.

4) If the manuscript seems like it might fit our niche, the AE then develops a list of six suggested reviewers to send to the journal office. If the manuscript is a bit of a stretch for the AE, then developing that list can take a bit of time and exploration. 

5) The journal office takes that list and checks for availability and some basic conflicts of interest. We try to give reviewers at least two months off between assignments. Then two reviewers are invited to review. If we don't get a response to the invitation in a few days, we follow up, wait a day, and then move down the list until we find two reviewers who agree to review. As can be imagined, this process can take some time for some manuscripts especially at some busy times of year. If we run out of names, we ask the AE for more suggestions and start the process over.

6) The standard due date for a review is 21 days after the reviewer agrees to review.

7) When the reviews are completed, the journal office checks them over to make sure the fields are filled out, there aren't any obvious missing bits, and any attachments uploaded correctly. When both reviews are in, the manuscript is returned to the associate editor for a recommendation. The deadline for the recommendation is two weeks since we expect that an AE may have to set aside a considerable block of time to sort out what needs to happen next.

8) The AE writes the recommendation and the manuscript moves back to the deciding editor, who reads over the whole package--manuscript, reviews, and recommendation--before writing the decision letter.

9) Finally, the decision letter is assembled and sent by the journal office.

We try to keep a manuscript moving along, but there are many steps when many busy people might take a little longer. We in the office work regular office hours (and have vacations and weekends and sick days), so if you submit your paper late on Friday, you won't hear from us until Monday.

The problem is always how to balance thorough with timely. When thorough review works well, it works very well indeed. I really appreciated how much it could mean for an author when I read Meghan Duffy's blog post about how review at Am Nat improved her paper:

http://dynamicecology.wordpress.com/2012/10/16/the-paper-that-ecology-rejected-that-later-won-the-mercer-award/

So when it takes a little longer, we ARE trying to get you the most useful feedback we can in as timely a period as we can, while trying to gauge whether the manuscript fits our niche.